CDS

Accession Number TCMCG006C48949
gbkey CDS
Protein Id XP_013733174.1
Location join(1575..2281,2390..2603,2691..2771,2889..2981,3044..3130,3385..3485,3605..3638,3733..3807,3902..3985,4071..4205,4286..4431,4513..4645)
Gene LOC106436775
GeneID 106436775
Organism Brassica napus

Protein

Length 629aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA293435
db_source XM_013877720.2
Definition 2-isopropylmalate synthase 1, chloroplastic-like [Brassica napus]

EGGNOG-MAPPER Annotation

COG_category E
Description Belongs to the alpha-IPM synthase homocitrate synthase family
KEGG_TC -
KEGG_Module M00432        [VIEW IN KEGG]
KEGG_Reaction R01213        [VIEW IN KEGG]
KEGG_rclass RC00004        [VIEW IN KEGG]
RC00470        [VIEW IN KEGG]
RC02754        [VIEW IN KEGG]
BRITE br01601        [VIEW IN KEGG]
ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
KEGG_ko ko:K01649        [VIEW IN KEGG]
EC 2.3.3.13        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko00290        [VIEW IN KEGG]
ko00620        [VIEW IN KEGG]
ko01100        [VIEW IN KEGG]
ko01110        [VIEW IN KEGG]
ko01210        [VIEW IN KEGG]
ko01230        [VIEW IN KEGG]
map00290        [VIEW IN KEGG]
map00620        [VIEW IN KEGG]
map01100        [VIEW IN KEGG]
map01110        [VIEW IN KEGG]
map01210        [VIEW IN KEGG]
map01230        [VIEW IN KEGG]
GOs GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0003852        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006082        [VIEW IN EMBL-EBI]
GO:0006520        [VIEW IN EMBL-EBI]
GO:0006551        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008652        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009081        [VIEW IN EMBL-EBI]
GO:0009082        [VIEW IN EMBL-EBI]
GO:0009098        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009526        [VIEW IN EMBL-EBI]
GO:0009532        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009570        [VIEW IN EMBL-EBI]
GO:0009941        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0016053        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0016746        [VIEW IN EMBL-EBI]
GO:0019752        [VIEW IN EMBL-EBI]
GO:0031967        [VIEW IN EMBL-EBI]
GO:0031975        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043436        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044281        [VIEW IN EMBL-EBI]
GO:0044283        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044434        [VIEW IN EMBL-EBI]
GO:0044435        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046394        [VIEW IN EMBL-EBI]
GO:0046912        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1901566        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1901605        [VIEW IN EMBL-EBI]
GO:1901607        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCGTCTTCCCTTCTCAGAAACCCTACACTCTCATCATCACCTTCTCTCCCCACCTTCTCCTCAACAATCACCACCACCACACCTCTCTCGTTCCGCTTCCCACCATCCCCCCACCACCACCACCACCGCCGCTCCTCCTCCGCCTCCCTCCGCCTCTCCTGCTCCATCTCAGATCCACCACCCCCTCTCCCCCCTCACCCCCTCCGCCGCCGCCGCCCGGACTACATCCCCAACCGCATTTCCGACCCCAACTACGTCCGCATCTTCGACACCACCCTCCGCGACGGCGAGCAGTCCCCCGGCGCCACGCTCACCTCCAAGGAGAAGCTCGACATCGCGCGCCAGCTCGCGAAGCTCGGCGTCGACATCATCGAGGCCGGGTTCCCCGCCGCGTCCAAAGACGACTTCGAGGCGGTCAAGACCATTTCCGAAACCGTCGGAAACGCGGTCGACGAGAACGGTTACGTCCCCGTCATCTGCGGTCTCTCGAGGTGTAACAAGAAAGATATCCAGACGGCTTGGGAGGCTGTGAGATACGCCAAACGGCCTAGGATCCATACGTTCATCGCCACGAGTGATATTCACTTGGAGTATAAGCTCAAGAAGAGTAAACAAGAAGTCATCGAGATCGCGAGGAGCATGGTTAGGTTCGCTAGGAGCTTGGGGTGTGATGACGTGGAGTTTAGTCCTGAAGATGCAGGAAGATCGGAGAGAGAGTTTTTGTATGAGATTCTTGGAGAAGTGATAAAAGCTGGAGCGACGACGCTTAATATTCCTGATACTGTTGGTATCACTTTGCCTAGTGAGTTTGGTCAGTTGATTGCTGATTTAAAGGCTAATACTCCTGGGATCGAGAACGTTGTCATCTCGACGCATTGTCAGAATGATCTTGGACTCTCTACCGCCAACACTTTATCTGGAGCACATGCTGGTGCGAGGCAGGTAGAAGTGACCATCAATGGAATTGGTGAAAGAGCTGGAAACGCTTCACTGGAAGAGGTTGTGATGGCCATAAAATGCCGTGGAGATCATGTGTTAGGAGGTCTGTTTACTGGCATTGATACTCGGCACATTGTTATGACAAGCAAGATGGTGGAAGATTACACTGGAATGCAAACGCAGCCCCATAAGGCTATTGTAGGAGCGAATGCTTTTGCTCATGAAAGTGGTATTCATCAGGATGGAATGCTGAAACACAAGGGTACATATGAAATTATATGCCCTGAAGAAATTGGACTTGAGCGATCAAATGATGCTGGCATTGTCTTAGGGAAGCTTAGTGGGCGTCATGCGTTGAAAGACCGTTTGACTGAGCTTGGTTATGTATTGGATGATGAACAGCTAAGCACCATTTTCTGGCGCTTCAAATCCGTGGCTGAGCAGAAAAAGAGAGTTACTGATGCGGATATAATAGCTTTGGTATCTGACGAGGTGTTCCAGCCAGAAGCTGTATGGAAACTCCTGGACATTCAGATAACTTGTGGAACTCTGGGGCTTTCAACAGCAACGGTGAAACTTGCTGATGCTGATGGCAAAGAGCATTGCGCTTGTTCAATGGGAACTGGCCCTGTTGATTCAGCTTATAAGGCAGTTGACCTTATCGTCAAGGAACCGGCGACTCTGCTTGAGTACTCAATGAATGCAGTAACAGAAGGCATTGATGCCATAGCAACTACACGAGTTCTTGTCCGTGGAAACAACACTTACACATCTACAAACGCAATAACTGGCGAAGAAGTTTTAAGGACCTTTAGTGGAACCGGAGCGGGAATGGACATTGTGGTGTCAAGCGTCAAGGCTTATGTAGGAGCTCTTAACAAAATGCTCGATTTCAAAGAGAAGTCTCCGAAAAAAGTTCCTTCTCGAAACATCAAAGTCACTGCCTGA
Protein:  
MASSLLRNPTLSSSPSLPTFSSTITTTTPLSFRFPPSPHHHHHRRSSSASLRLSCSISDPPPPLPPHPLRRRRPDYIPNRISDPNYVRIFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKDDFEAVKTISETVGNAVDENGYVPVICGLSRCNKKDIQTAWEAVRYAKRPRIHTFIATSDIHLEYKLKKSKQEVIEIARSMVRFARSLGCDDVEFSPEDAGRSEREFLYEILGEVIKAGATTLNIPDTVGITLPSEFGQLIADLKANTPGIENVVISTHCQNDLGLSTANTLSGAHAGARQVEVTINGIGERAGNASLEEVVMAIKCRGDHVLGGLFTGIDTRHIVMTSKMVEDYTGMQTQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIICPEEIGLERSNDAGIVLGKLSGRHALKDRLTELGYVLDDEQLSTIFWRFKSVAEQKKRVTDADIIALVSDEVFQPEAVWKLLDIQITCGTLGLSTATVKLADADGKEHCACSMGTGPVDSAYKAVDLIVKEPATLLEYSMNAVTEGIDAIATTRVLVRGNNTYTSTNAITGEEVLRTFSGTGAGMDIVVSSVKAYVGALNKMLDFKEKSPKKVPSRNIKVTA